2024-03-29T08:57:47Z
http://www.diagnosticpathology.eu/content/index.php/dpath/oai
oai:ojs2.localhost:article/98
2018-06-19T09:01:44Z
dpath:EDI
v2
http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/98
2018-06-19T09:01:44Z
Diagnostic Pathology
Vol 2 No 1 (2016): 2016
Diagnosticpathology.eu – 2015 – Experiences – 2016 – Perspectives
Kayser, Klaus; Charite - Berlin
2015-12-30 00:00:00
Authors who publish with this journal agree to the following terms:1. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).4. In case of virtual slide publication the authors agree to copy the article in a structural modified version to the journal's VS archive.
url:http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/98
diagnosticpathology.eu, open source journal, communication network, virtual slide, automated measurement, environmental hazard
en
The peer reviewed open access journal diagnosticpathology.eu was implemented in March, 2015. It is a tailored, open source and financially completely independent scientific medical journal, and part of a medical communication network. The communication network includes different servers such as the Virtual International Pathology Institute (VIPI, diagnomx.eu/vipi), an automated image measuring system (EAMUS), an anatomy training course, a collection of sixty rare and common lung diseases, and a mice anatomy atlas. A collection of all hazard oriented diseases and and additional of more than 120 rare cases including virtual slides and the original publications are in preparation.The journal offers the opportunity to publish “besides the microscope†and to submit data for “interactive publicationâ€. Both tools are unique, and cannot be found elsewhere. The preparation of virtual slides (submission of glass slides) is mandatory for publication of suitable articles.The journal’s name diagnostic pathology seems to be attractive for some publishing companies that try to copy some issues of the real journal on diagnostic pathology.
oai:ojs2.localhost:article/279
2020-12-16T19:42:56Z
dpath:EDI
v2
http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/279
2020-12-16T19:42:56Z
Diagnostic Pathology
Vol 6 No 1 (2020): Vol 6 No 1
Diagnosticpathology.eu - Reflections 2020 and Perspectives 2021
Kayser, Klaus; Charite - Berlin
2020-12-16 13:51:22
Authors who publish with this journal agree to the following terms:1. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).4. In case of virtual slide publication the authors agree to copy the article in a structural modified version to the journal's VS archive.
url:http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/279
Background and present situation: The journal www.diagnosticpathology.eu experienced a difficult year in 2020 and expects poor perspectives in 2021. It is still of interest to several colleagues and its articles are still cited after years. However, this journal with technically unique features such as publication of virtual slides, preformatted case reports, as well as advanced methods of annotations was not perceived as valuable for the career of the contributing authors.
Details: Authors are highly interested in the maximum benefit from their research which is obviously regulated by research financing and / or by their laboratory institution and administration.
Each administration has to implement financially oriented regulations in science which are based upon the ‘scoring’ of the publications. Therefore, certain score systems such as citation indices of various algorithms have been created. They possess remarkable financial impact. They automatically support the main stream of journals and regulate the market.
Furthermore, competition in open access journals has increased and predatory journals exist. To attract scientists several open access journals do not limit their publication area to specific medical research or disease specification and publish a broad spectrum of research themes, diseases and clinical presentations.
Forecast: The year 2021 will become as difficult as the year 2020 for the journal www.diagnosticpathology.eu if its goal and business model will remain. It was based on voluntary resources and focused on innovative research publication only. Therefore, new goals have to be defined. These will include:
Redefinition and reorganization of the journal. The journal might not remain a ‘simple’ communication tool for research and science. It might be expanded to become a ‘real research tool’ in scientific communication.
New automated features have to be implemented. These might include ‘estimates for future impact’ of published articles based upon entropy considerations and, automated review of submitted articles.
Conclusions: We still believe in our basic concept that ‘communication in research’ has to be separated from financial issues. It should take into account that nature can best be understood by investigating in its boundaries.
oai:ojs2.localhost:article/236
2018-06-19T08:55:24Z
dpath:EDI
v2
http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/236
2018-06-19T08:55:24Z
Diagnostic Pathology
Vol 2 No 1 (2016): 2016
Diagnosticpathology.eu ; Experiences 2016 – Perspectives 2017
Kayser, Klaus; Charite - Berlin
2016-12-21 16:25:26
Authors who publish with this journal agree to the following terms:1. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).4. In case of virtual slide publication the authors agree to copy the article in a structural modified version to the journal's VS archive.
url:http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/236
www.diagnosticpathology.eu, citation index, open source journal, communication network, virtual slide, automated measurement, environmental hazards.
en
The peer reviewed open access journal diagnosticpathology.eu is embedded in a financially completely independent medical communication network of nodes which serve for different duties.
The nodes include the services of the unique Virtual International Pathology Institute (VIPI, www.diagnomx.eu/vipi), an automated image measuring system (EAMUS), an anatomy training course, and a collection of sixty rare and common lung diseases.
An atlas of ‘Natural and Synthetic Mineral Fibers affecting Man’ (including fine granulate) has been added in 2016 as well as all articles of the former ‘Electronic Journal of Pathology and Histology’, which was the first solely electronically published peer reviewed medical journal to our knowledge.
The announced collection of more than 120 rare cases including virtual slides and the original publications is in preparation, as well the atlas of ‘all known lung diseases’, a data base that covers approximately 860 different lung diseases, including available clinical, endoscopic, radiological, pathological, genetic and occupational data. These projects have left the start phase and will probably be ready in 2017.
The journal has published more than 120 original articles and the proceedings of the 13th European Congress on Digital Pathology, held in Berlin, Germany, May 25 – 28, 2016. Its specific publication tools ‘publish beside the microscope’ and to submit data for ‘interactive publication’ have been used in 10 (2) cases. Both tools are unique, and cannot be found elsewhere. The preparation of virtual slides (submission of glass slides) is mandatory for publication of suitable articles.
The journal’s name diagnostic pathology seems to be attractive for some publishing companies that try to copy some issues of the real journal on diagnostic pathology (www.diagnosticpathology.eu).
oai:ojs2.localhost:article/256
2019-08-22T15:36:31Z
dpath:EDI
v2
http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/256
2019-08-22T15:36:31Z
Diagnostic Pathology
Vol 3 No 1 (2017): 2017
www.diagnosticpathology.eu: Reflections of 2017 – Perspectives on 2018
Kayser, Klaus; Charite, Berlin, Germany
2017-12-17 18:41:13
Authors who publish with this journal agree to the following terms:1. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).4. In case of virtual slide publication the authors agree to copy the article in a structural modified version to the journal's VS archive.
url:http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/256
The peer reviewed open access journal www.diagnosticpathology.eu remains still the only financially autonomous, solely science and medicine obliged journal. It is embedded in a medical communication network of different service nodes.The nodes include the unique Virtual International Pathology Institute (VIPI, www.diagnomx.eu/vipi), an automated image measuring system (EAMUS), a lexicon of air borne hazards such as natural and synthetic mineral fibers, fine granulate and air pollutants (Natural and Synthetic Mineral Fibers affecting Man), an anatomy training course, and a collection of sixty rare and common lung diseases. It offers access to the articles of the first solely electronically distributed journal of pathology (Electronic Journal of Pathology and Histology)In 2017 we focused on the implementation of a new open journal system (OJS) release. We had to correct several inborn errors prior to the final usage. Therefore, the announced collection of virtual slides in concordance with the original publications remained still in its start phase. The journal’s ‘outfit’ has been adjusted to the modern styles in use.The number of submitted articles declined remarkably, and the journal experienced hard competition in 2017. The main reasons are a missing Scientific Citation Index (SCI) and its listing in journal databanks such as pubmed. Entropy calculations of the journal’s scientific impact and value are in the range of well known pathology journals such as the conventional paper printed ‘The Pathology Journal’.The implemented specific publication tools ‘publish beside the microscope’ and the submission of contributions for ‘interactive publication’ have been successfully tested but only rarely been used. We still expect attractive and scientifically high standard publications in 2018.
Keywords: www.diagnosticpathology.eu, open source journal, communication network, virtual slide, automated measurement, predatory journal.
oai:ojs2.localhost:article/265
2018-12-21T18:38:01Z
dpath:EDI
v2
http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/265
2018-12-21T18:38:01Z
Diagnostic Pathology
Vol 4 No 1 (2018): 2018
How to implement virtual microscopy in routine tissue – based diagnosis: Guidelines and Recommendations of the Federal Association of German Pathologists
Kayser, Klaus; Charite - Berlin
Kayser, Gian; Institute of Pathology, University of Freiburg, Germany
2018-09-08 05:32:16
Authors who publish with this journal agree to the following terms:1. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).4. In case of virtual slide publication the authors agree to copy the article in a structural modified version to the journal's VS archive.
url:http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/265
TMA non small cell lung cancer
Liver biopsy LALD (Lysosomal Acid Lipase Deficiency)
Dermtofibrosarcoma protuberans
Digital Pathology has jumped over the first barriers and enters the world of routine tissue – based diagnosis (surgical pathology) slowly and continuously. Several large pathology institutions use virtual slides (VS) for routine diagnosis, store the images in digital archives, and digitize their workflow according to the needs of laboratory (LIS) and hospital information system (HIS).Development and implementation of communication standards as well as adequate certification and quality control units are mandatory if an adequate and secure diagnosis and treatment of patients should be maintained or amended.The publication of the translated guidelines of the Federal Association of German Pathologists should give our readers the opportunity to read the well designed and substantial document in its original version. We include a few representative virtual slides in our editorial in order to demonstrate the actual performance of virtual microscopy.Thus, we offer our readers to comparing some issues of the virtual world with their own situation and to get informed about the essential procedures of accurate virtual microscopy implementation.
oai:ojs2.localhost:article/271
2019-08-22T16:45:27Z
dpath:EDI
v2
http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/271
2019-08-22T16:45:27Z
Diagnostic Pathology
Vol 4 No 1 (2018): 2018
www.diagnosticpathology.eu: 2018 Reflections – Perspectives 2019
Kayser, Klaus; Charite - Berlin
2018-12-23 09:46:41
Authors who publish with this journal agree to the following terms:1. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).4. In case of virtual slide publication the authors agree to copy the article in a structural modified version to the journal's VS archive.
url:http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/271
Basics: The peer reviewed open access journal www.diagnosticpathology.eu remains the only peer reviewed scientific journal that publishes virtual slides. Several innovative procedures have been implemented too which can only be performed and distributed in an electronic environment. These include for example annotations of text and images, and visual / acoustic display of animations. www.diagnosticpathology.eu is a non - profit oriented and financially autonomous journal. It is supported by volunteers and only obliged to science and medicine. These features permit a flexible and fast implementation of recently developed publication tools. It is part of a scientific communication network and consists of different service nodes which act in a cloud.Compartments: The nodes include the closed PHP forum Virtual International Pathology Institute (VIPI, www.diagnomx.eu/vipi ), an automated image measuring system (EAMUS), a lexicon of air borne hazards such as natural and synthetic mineral fibers, fine granulate and air pollutants (Natural and Synthetic Mineral Fibers affecting Man), an anatomy training course, and a collection of sixty rare and common lung diseases. All articles of the worldwide first solely electronically distributed journal of pathology (Electronic Journal of Pathology and Histology) are herein accessible without any fee for the readers.Short report of 2018: In focus have been the implement of virtual slides (VS) and the publication of articles which address theoretical and practical issues of digital pathology. A ‘general pathologist’ might not be familiar with these issues; however, they are already waiting at the horizon. These include discussions on a ‘potential replacement’ of a diagnostic pathologist by an autonomous computerized diagnosis system as well as basic principles of scientific communication and ‘work distribution’.The guidelines of digital pathology presented by the Professional Association of German Pathologists have been included as well. VS are included in the articles in close collaboration with smartinmedia GmbH & Co KG www.smartinmedia.com using the image visualization and annotation system www.easyzoom.com.Five characteristic examples of virtual slides are included in this editorial. They exemplarily demonstrate completely digitized routine glass slides of a rare case (pulmonary Morbus Castleman, hyaline vascular type, HE stain, DAB antibody immune histochemical stains, CD3, CD20, CD21, Factor VIII). The reader might check the image quality, navigate, and annotate the VS. The details of VS image evaluation are described in detail in the appendix I.All published articles are now open for text annotations by the author and / or reader too, either in a private section or in an environment open for all readers. The details of adequate annotation by the open access system www.hypothes.is are described in appendix II.Oral presentations have been equipped with a bar code and provided with a DOI reference. We consider them a bridge between the ‘classic review performance’ and a potential new publication performance which neglects reviews. It will hold on or to delete the article after a certain time dependent on specific ‘article hold on’ measurements (which might include conventional rewire statements too). The number of published articles remained limit, and stayed at the low level of publications in 2017. The main reasons have been mentioned in 2017 already and include a missing Scientific Citation Index and listing in journal data banks such as PubMed. Both issues primarily focus on financial issues (the higher the SCI the more expensive is the publication fee). They are of limited scientific value and do not really promote innovative ideas or experiments to our opinion.
oai:ojs2.localhost:article/1
2018-06-19T09:07:53Z
dpath:EDI
v2
http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/1
2018-06-19T09:07:53Z
Diagnostic Pathology
2015
Starting a new peer reviewed open access journal diagnosticpathology.eu
Kayser, Klaus; Charite - Berlin
2015-02-20 16:40:58
Authors who publish with this journal agree to the following terms:1. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).4. In case of virtual slide publication the authors agree to copy the article in a structural modified version to the journal's VS archive.
url:http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/1
Electronic publication; open access; surgical pathology; virtual slides; acoustic information
en
This is an introduction editorial on behalf of the implementation of the peer reviewed open access journal diagnosticpathology.eu that covers all aspects in diagnostic pathology. The advantages, constraints, the present stage and expectations of open access publication are discussed, and details of the new journal are described.
oai:ojs2.localhost:article/276
2020-01-02T16:27:11Z
dpath:EDI
v2
http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/276
2020-01-02T16:27:11Z
Diagnostic Pathology
Vol 5 No 1 (2019): Vol. 5 No. 1 2019
Artificial Intelligence (AI) in cloud integrated, open access pathology publications: perspectives on 2020.
Kayser, Klaus; Charite - Berlin
2019-12-31 16:27:11
Authors who publish with this journal agree to the following terms:1. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).4. In case of virtual slide publication the authors agree to copy the article in a structural modified version to the journal's VS archive.
url:http://www.diagnosticpathology.eu/content/index.php/dpath/article/view/276
Goal: To describe, maintain and further develop the communication network of medical sciences www.diagnosticpathology.eu that publishes electronically submitted peer reviewed medical articles and fully takes advantage of its electronic environment, and to give the reader the opportunity to view digitized whole slide images (virtual slides, VS), to measure image objects, and to annotate images and text.Background: The unique open access, peer reviewed journal www.diagnosticpathology.eu is embedded in a communication environment of different cloud components. The components include several distributed servers and databank systems such as access to article integrated VS, data storage, or scientific data banks (atlas of fine granulate and natural and synthetic fiber hazards). Implementation specificities: Theoretical considerations on specific substantial differences between the physical real world and its virtual transformations guide the implementation. The differences include, for example, the minimum number of mandatory space dimensions, of their essential (ir)-reversibility of objects, structures, and functions as well as the relationship of image features to the observation time.The implemented system focuses on communication issues in tissue – based science only. Its volunteers allow disregard any predominantly financial impact such as financial profit. Artificial intelligence (AI) is used to maintain its sustainability, connectivity, distribution, measurement and discussion of medical images, especially microscopic slides. 2019 Data: The journal and its concurrent operation of interactive communication demonstrate the advantage of AI in open access publication. VS are ready to be screened and annotated by any reader worldwide. QR codes provide DOI registration and upload of oral presentations by the auditorium. Interactive publication permits the release of a distinct continuous article chain. Annotations of VS images can be transferred in public or private databanks. The reader is invited to check his impression of marker scores by own automated measurements.Perspectives: Applications of AI in tissue – based diagnosis, communication and implementation are not limited to deep learning, quality assurance or so-called diagnosis assistants. AI is on the way to significantly modify medical diagnostics and treatment. These modifications will, in addition, modify our understanding of disease and life. www.diagnosticpathology.eu is one of the pathfinders and pioneers in this unavoidable process.Keywords: Artificial Intelligence, Open Access Journal, Virtual Slide, Deep Learning, Tissue – based Diagnosis.
Virtual Slides:
Tuberculosis Fibrosis
The exemplarily included virtual slides and AVI Videos are published in http://dx.doi.org/10.17629/www.diagnosticpathology.eu-2018-4:269